Profesor: Gisella Orjeda
Creditaje: (3 horas crédito)
Aula 2EB
Horario de clases
Inicio de clases: Lunes 12 de Marzo
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El
secuenciamiento de genomas |
Gisella
Orjeda |
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Lunes |
12/03/2007 |
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Miercoles |
14/03/2007 |
1.The International Human Genome Mapping
Consortium. Nature. 2001. 409, 934-941A physical map of the human
genome. |
Grace
Velapatiño-Julio Aguilar |
http://www.nature.com/nature/journal/v409/n6822/full/409934a0.html |
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Lunes |
19/03/2007 |
2.
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000.
408, 798-815 |
Roberto Lozano,Carlos Balmaceda |
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Comparacion
de genomas y uso de secuencia |
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Miercoles |
21/03/2007 |
3.The Chimpanzee Sequencing and Analysis Consortium.
Nature. 2005. Initial sequence of the chimpanzee genome and comparison with
the human genome |
Sebastian
Gonzales-Silvia Davila |
http://www.nature.com/nature/journal/v437/n7055/full/nature04072.html |
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Lunes |
26/03/2007 |
4.M A Campbell, B J Haas, J P Hamilton, S. Mount,and
C Robin Buell. Comprehensive analysis of alternative splicing in rice and
comparative analyses with Arabidopsis. BMC Genomics. 2006; 7: 327 |
Felipe Yon
- Carlos Castrillon |
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=17194304 |
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Miercoles |
28/03/2007 |
8 am
Videoconferencia Xose Fernandez.
EBI. Introduccion a Ensembl
y BioMart, herramienta de minería
de datos |
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Lunes |
02/04/2007 |
Examen 1 |
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Tecnicas
para secuenciamiento y analisis de
genomas |
Gisella
Orjeda |
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Miercoles |
04/04/2007 |
5.Osoegawa.
2002 Genome research .A Bacterial Artificial Chromosome Library for
Sequencing the Complete Human Genome (este articulo pertenece al tema
Tecnicas…) |
Jhuliana
Amaro-Maria Julia Gonzales |
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6.A. Marra et al. High Throughput Fingerprint
Analysis of Large-Insert Clones.Marco Genome Research Vol. 7, Issue 11,
1072-1084, November 1997 |
Irene
Delgado de la Flor- Oscar Aguinaga |
http://www.genome.org/cgi/content/full/7/11/1072?ijkey=288633803f769690c0d31ca1be706649d698e569 |
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Lunes |
09/04/2007 |
7.Chen et al.An Integrated Physical and Genetic Map
of the Rice Genome.The Plant Cell, Vol. 14, 537-545, March 2002 |
Grace
Velapatiño-Julio Aguilar |
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Miercoles |
11/04/2007 |
8.Cheng. 2001.High-Resolution Pachytene Chromosome
Mapping of Bacterial Artificial Chromosomes Anchored by Genetic Markers
Reveals the Centromere Location and the Distribution of Genetic Recombination
Along Chromosome 10 of Rice. Genetics.Vol. 157, 1749-1757 |
Sebastian
Gonzales-Silvia Davila |
http://www.genetics.org/cgi/content/full/157/4/1749?ijkey=a502e8706e8f1ef457eaecd2a815caced98d40d4 |
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9. Brent. Genome annotation past, present, and
future: How to define an ORF at each locus.Genome Research 15:1777-1786, 2005 |
Luis
Castillo-Cristina Rojas |
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Lunes |
16/04/2007 |
Examen 2 |
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Genomica funcional |
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Miercoles |
18/04/2007 |
10. Uetz
et al 2000. A comprehensive analysis of protein–protein interactions in
Saccharomyces cerevisiae. Nature 403, 623-627 |
Jhuliana
Amaro-Maria Julia Gonzales |
http://www.nature.com/nature/journal/v403/n6770/full/403623a0.html |
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11.Hugues Roest Crollius et al. Nature
Genet. 2000 Estimate of human gene number provided by genome-wide analysis
using Tetraodon Nigroviridis DNA sequence |
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http://www.nature.com/ng/journal/v25/n2/full/ng0600_235.html |
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Lunes |
23/04/2007 |
12.Genome Research 2005. Sequence, annotation, and
analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing
Consortium.
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Felipe Yon
- Carlos Castrillon |
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13. Zhu&Buell. 2007 Improvement of whole-genome
annotation of cereals through comparative analyses.Genome Research. published
online Feb 6, 2007. |
Sebastian
Gonzales-Silvia Davila |
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Miercoles |
25/04/2007 |
8am:
Videoconference-Insights into the Rice Genome. Dr. Robin Buell. Associate Investigator.
TIGR |
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Lunes |
30/04/2007 |
feriado |
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Miercoles |
02/05/2007 |
8am: Videoconference-
Comparative Genomics in
Vertebrates: Lessons from the Tetraodon GenomeHugues Roest Crollius,
Ecole National Superieure, Paris 9am: Videoconference: La complejidad de los genes
humanos, Roderic Guigo, Centre de Regulacio Genomica, Grup de Recerca en
Informatica Biomedica (IMIM and UPF), Barcelona, España (1h) |
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http://www.biologie.ens.fr/dyogen/?lang=en |
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Lunes |
07/05/2007 |
14. Bachem et al. 2002 (Chapter 3.3.3) CDNA y AFLP y
Brugmans 2002.
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Roberto
Lozano,Carlos Balmaceda |
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15. A novel method for the construction of genome
wide transcriptome maps. The Plant Journal (2002) 31(2),
211±222 (leer resto de articulos de Bachem) |
Felipe Yon
- Carlos Castrillon |
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Miercoles |
09/05/2007 |
Videoconferencia-
Dr. |
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http://www.dpw.wau.nl/pv/staff/staffmember.php?email=Christian.Bachem@wur.nl |
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Lunes |
14/05/2007 |
Examen 3 |
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T-DNA
Mutagenesis y transcriptomica |
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Miercoles |
16/05/2007 |
T-DNA Mutagenesis: From Tagging to
Insertion Sequence Databases |
Luis
Destefano |
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Lunes |
21/05/2007 |
16. Floral dip: a simplified method
forAgrobacterium-mediated transformation of Arabidopsis thaliana, (1998)
Plant Journal, 16-735-743 |
Irene Delgado
de la Flor - Oscar Aguinaga |
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17. Large-scale T-DNA mutagenesis in Arabidopsis for
functional genomic analysis. (2000) Functional Integrative Genomics 1:25-34 |
Luis
Castillo - Cristina Rojas |
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Miercoles |
23/05/2007 |
18. T-DNA insertational mutagenesis for functional
genomics in rice. (2000)
Plant Journal, 22: 561-570. |
Maria
Julia Gonzales - Jhuliana Amaro |
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19. Agrobacterium T-DNA integration in Arabidopsis is
correlated with DNA sequence compositions that occur frequently in gene
promoter regions. (2005)
Functional Integrative Genomics 5: 240-253. |
Roberto
Lozano - Carlos Balmaceda |
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Lunes |
28/05/2007 |
Transcriptomics in Plants: From Expression to
Gene Function |
Luis
Destefano |
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Miercoles |
30/05/2007 |
20. Gene expression analysis by massively parallel signature
sequencing (MPSS) on microbead arrays (2000) Nature Biotechnology 18: 630-634 |
Irene
Delgado de la Flor - Oscar Aguinaga |
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21. Design issues for cDNA microarrays experiments
(2002) Nature Reviews Genetics, 3: 579-588 |
Felipe Yon
- Carlos Castrillon |
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Lunes |
04/06/2007 |
22. Fundamentals of Experimenatl Design for cDNA
microarrays. (2002)
Nature Genetics, 32: 490-495. |
Sebastian
Gonzales - Silvia Davila |
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23. Expression profiling using a hexamer-based universal
microarray (2004) Nature Biotechnology, 22: 418-426. |
Grace
Velapatiño-Julio Aguilar |
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24.Gene expression profiling of potato responses to
cold, heat, and salt stress (2005) Functional Integrative Genomics 5: 201-207 |
Maria
Julia Gonzales - Jhuliana Amaro |
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Genetica
hoy en dia en los programas de mejoramiento |
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Miercoles |
18/06/2007 |
6pm
Videoconferencia Augusto Becerra.CSIRO-australia. QTL mapping Marker assisted
selection in Cotton |
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Lunes |
20/06/2007 |
Examen 4 |
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Última modificación: 13 de Mayo, 2007